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Structure and binding efficiency relations of QB site inhibitors of photosynthetic reaction centres

In: General Physiology and Biophysics, vol. 34, no. 2
Ivan Husu - Melinda Magyar - Tibor Szabó - Béla Fiser - Enrique Gómez-Bengoa - László Nagy

Details:

Year, pages: 2015, 119 - 133
About article:
Many herbicides employed in agriculture and also some antibiotics bind to a specific site of the reaction centre protein (RC) blocking the photosynthetic electron transport. Crystal structures showed that all these compounds bind at the secondary ubiquinone (QB) site albeit to slightly different places. Different herbicide molecules have different binding affinities (evaluated as inhibition constants, KI, and binding enthalpy values, ΔHbind). The action of inhibitors depends on the following parameters: (i) herbicide molecular structure; (ii) interactions between herbicide and quinone binding site; (iii) protein environment. In our investigations KI and ΔHbind were determined for several inhibitors. Bound herbicide structures were optimized and their intramolecular charge distributions were calculated. Experimental and calculated data were compared to those available from databank crystal structures. We can state that the herbicide inhibition efficiency depends on steric and electronic, i.e. geometry of binding with the protein and molecular charge distribution, respectively. Apolar bulky groups on N-7 atom of the inhibitor molecule (like t-buthyl in terbutryn) are preferable for establishing stronger interactions with QB site, while such substituents are not recommended on N-8. The N-4,7,8 nitrogen atoms maintain a larger electron density so that more effective H-bonds are formed between the inhibitor and the surrounding amino acids of the protein.
How to cite:
ISO 690:
Husu, I., Magyar, M., Szabó, T., Fiser, B., Gómez-Bengoa, E., Nagy, L. 2015. Structure and binding efficiency relations of QB site inhibitors of photosynthetic reaction centres. In General Physiology and Biophysics, vol. 34, no.2, pp. 119-133. 0231-5882.

APA:
Husu, I., Magyar, M., Szabó, T., Fiser, B., Gómez-Bengoa, E., Nagy, L. (2015). Structure and binding efficiency relations of QB site inhibitors of photosynthetic reaction centres. General Physiology and Biophysics, 34(2), 119-133. 0231-5882.